Barely Significant

Excerpts

514,629 sentences

nominally significantP < 1 × 10 − 50.0× alphagold
Replication cohort genotyping, QC and association analysis SNPs determined to have a nominally significant association with a nevirapine hypersensitivity phenotype ( P < 1 × 10 − 5 ) in the discovery cohort were subsequently typed in the replication cohort using either the Sequenom MassArray iPLEX platform (Sequenom Inc., San Diego, CA, USA) or custom TaqMan real-time PCR SNP genotyping assays (Life Technologies, Paisley, UK) according to the manufacturer’s protocols.
highly significantP <10 −50.0× alphaqualifiedgold
Variants were thus discarded if: (i) UCSC alignability ≠ 1 (100bp window size); (ii) variant within 10 bps of a simple repeat region; (iii) highly significant deviation from Hardy-Weinberg equilibrium (HWE) in cases or controls ( P <10 −5 ); (iv) no call rate significantly different between case-samples and control-samples ( P <10 −5 ); (v) no call rate across either case or control samples >0.03.
highly significantp < 1×10 −50.0× alphaqualifiedgold
CloneCNA accurately estimates the cellularity with highly significant positive correlation (correlation coefficient > 0.99, p < 1×10 −5 , and mean absolute error < 0.03) with the ground truth cellularity across all mixed samples (Additional file 2 : Figure S6), indicating CloneCNA can precisely reproduce clonal components.